mixcr groupClones
Groups clones in .clna/.clns files by Cell tags. Grouped clones can be exported using mixcr exportCloneGroups
.
mixcr exportClonesOverlap
[--report <path>]
[--json-report <path>]
[--use-local-temp]
[--force-overwrite]
[--no-warnings]
[--verbose]
[--help]
clones.(clns|clna)
grouped.(clns|clna)
clones.(clns|clna)
- Path to input file.
grouped.(clns|clna)
- Path where to write output. Will have the same file type.
-r, --report <path>
- Report file (human-readable version, see
-j / --json-report
for machine readable report). -j, --json-report <path>
- JSON formatted report file.
--use-local-temp
- Put temporary files in the same folder as the output files.
-f, --force-overwrite
- Force overwrite of output file(s).
-nw, --no-warnings
- Suppress all warning messages.
--verbose
- Verbose messages.
-h, --help
- Show this help message and exit.